徐 雲

電 話：0551-63602441

Email：xuyun@ustc.edu.cn

個人主頁：http://staff.ustc.edu.cn/~xuyun/ 


主要研究方向：大數據挖掘算法及應用，並行編程模型及性能優化等。


徐雲，博士，教授，博導。2002年中國科學技術大學計算機係博士畢業，獲計算機軟件與理論專業博士學位。1999年起在中國科學技術大學計算機學院、國家高性能計算中心（合肥）從事並行計算與應用相關的研究和教學工作。現為國家高性能計算中心（合肥）副主任和安徽省計算機學會秘書長，IEEE、ACM和中國計算機學會會員、中國計算機學會理論計算機科學專委會委員。近幾年主要研究多核並行編程模型及性能優化、大規模程序和生物序列分析算法等。至今已主持國家重點自然科學基金子課題及麵上課題、973子課題、863子課題多項，以及華為、中電14所等橫向合作項目。在國內外重要學術期刊和會議發表學術論文80餘篇。


獲獎情況：

  1. “並行計算”課程的創建及其輻射與示範作用，國家級教學成果二等獎，排名第2，2009.9；

  2. “並行計算”相關課程教學團隊，國家級教學團隊，排名第3，2009.9；

  3.  188金宝慱体育版 王寬誠育才獎一等獎，個人，2009.8。


十篇代表性論著：

  1. Haoyu Cheng, Yong Zhang and Yun Xu. BitMapper2: a GPU-accelerated all-mapper based on the sparse q-gram index. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2019, 16(3): 886-897.

  2. Pengcheng Wang, Jeffrey Svajlenko, Yanzhao Wu, Yun Xu, Chanchal K. Roy. CCAligner: a token based large-gap clone detector. In Proceedings of the 40th International Conference on Software Engineering (ICSE'18). May 30 – June 1, 2018, Gothenburg, Sweden. pp. 1066-1077.

  3. Haoyu Cheng, Ming Wu, Yun Xu. FMtree: A fast locating algorithm of FM-indexes for genomic data. Bioinformatics, 2018, 34(3): 416–424.

  4. Haoyu Chen, Huaipan Jiang, Jiaoyun Yang, Yun Xu, Yi Shang. BitMapper: an efficient all-mapper based on bit-vector computing. BMC Bioinformatics, 2015, 16: 192.

  5. Jiaoyun Yang, Yun Xu, Yi Shang and Guoliang Chen. A Space-Bounded Anytime Algorithm for the Multiple Longest Common Subsequence Problem. IEEE Transactions on Knowledge and Data Engineering, 2014, 26(11): 2599-2609.

  6. Weihua Pan, Yanan Zhao, Yun Xu*, Fengfeng Zhou. WinHAP2: an extremely fast haplotype phasing program for long genotype sequences. BMC Bioinformatics, 2014, 15:164.

  7. Jiaoyun Yang, Yun Xu, Yi Shang. A new progressive algorithm for multiple longest common subsequences problem and its efficient parallelization. IEEE Trans. on Parallel and Distributed Systems, 2013, 24(5): 862-870.

  8. Tao Yan, Rynson Lau, Yun Xu, Liusheng Huang. Depth Mapping for Stereoscopic Videos. International Journal of Computer Vision, 2013, 102: 293-307.

  9. Jiaoyun Yang, Yun Xu, Xiaohui Yao, and Guoliang Chen. FNphasing: A novel fast heuristic algorithm for haplotype phasing based on flow network model. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2013, 10(2): 372-382.

  10. Yun Xu, Jiaoyun Yang, Yuzhong Zhao, Yi Shang. Improved Voting Algorithms For Planted (l, d) Motif Search. Information Sciences, 2013, 237: 305-312.


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